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Diagnosing and Addressing Water That Smells Like Rotten Eggs: Causes, Solutions, and Prevention

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Colleen Roberts

Posted on February 23, 2025

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Addressing Smelly Well Water That Smells Like Rotten Eggs

If you’ve ever experienced water that smells like rotten eggs, you’re not alone! Many homeowners deal with smelly water, and while it’s often not a major health risk, it can be a sign of something that needs attention. You can restore the quality of your water and get rid of well water odors by determining the cause and finding the best solution with a little detective work.

What Causes Water That Smells Like Rotten Eggs?

There are several reasons your well water might have a strange smell, and they range from harmless to more serious concerns.

One of the most common and often seasonal culprits behind that “rotten egg” smell is hydrogen sulfide gas. H₂S is produced when sulfur-reducing bacteria in the water break down sulfur compounds, typically in oxygen-poor environments like deep wells. While hydrogen sulfide itself isn’t harmful in low concentrations, it can be damaging to your plumbing, cause staining, and leave behind that unmistakable odor.

Another smelly well water issue could be coming from an iron bacteria problem, which produces a musty or swampy odor. These bacteria feed on iron and manganese in the water and can leave slimy, rust-colored deposits in pipes and fixtures. In some cases, decaying organic material like leaves or algae near your well can introduce earthy or fishy smells, especially in shallow wells.

Your Water Heater Smells Like Sewage

Sometimes, the problem might not be the water well itself but may be the hot water heater. Does the hot water from your water heater smell like sewage? If the magnesium or aluminum anode rod in your water heater is corroding, it can react with sulfites in the water to create hydrogen sulfide gas. Sometimes the water can even react with the wrong type of anode. This is more obvious in hot water since the heating process accelerates the chemical reactions, causing your water heater to smell like sewage.

Finally, more serious contamination like industrial runoff, sewage, or agricultural chemicals can introduce foul smells and pose a risk to your health. These situations require immediate water quality testing and remediation.

How to Diagnose the Smelly Well Water Problem

When you notice an odor in your well water, the first step is to determine where it is coming from. One of the simplest ways to do this is by looking at the color of your water. It’s best to carefully remove the lid from your toilet tank, and just take a look… red or brown stains often point to iron bacteria or high iron content, while black or gray water could be a sign of sulfate-reducing bacteria. If you see an oily sheen or slimy buildup, that’s another indicator that iron bacteria might be involved.

sacrificial anode water heater replacement may help water that smells like rotten egg

Identifying the Source of the Odor: Hot Water vs. Cold Water

The next thing to check is where the water odor is strongest. If it only affects your hot water, it’s likely a problem with the sacrificial anode rod in your water heater. If it’s only your cold water, hydrogen sulfide might be coming from the water well or somewhere in the plumbing.

If every faucet is affected, you’re dealing with a broader contamination issue that could be related to sulfur bacteria or other pollutants, and you should immediately test your well water. Until a water test report from an accredited lab is available, the water might not be safe to use.

To further narrow things down, you can isolate the source of the well water odor by testing a single faucet. Fill a glass away from the drain and smell it. If the odor persists, the water itself is contaminated. If the smell fades, the issue might be with bacteria in the drain. Additionally, if you see bubbles or effervescence in the water, this could signal dissolved gases like methane or hydrogen sulfide, which may need aeration or venting.

How to Fix Water That Smells Like Rotten Eggs

Once you’ve identified the source of the odor, there are several treatment options available to resolve the issue.

Whole-house filtration systems can address a variety of water quality problems; some opt for chemical treatment such as chlorination or oxidizing filters that combine air injection and filtration to handle higher levels of H₂S.

For hydrogen sulfide, aeration systems are a great option. By injecting air into the water, these systems oxidize hydrogen sulfide, turning it into sulfur particles that can then be filtered out. Shock chlorination is another effective method, as it kills the bacteria responsible for hydrogen sulfide. A post-treatment catalytic carbon filter can be added to remove any remaining chlorine from the water. Alternatively, hydrogen peroxide injections can oxidize H₂S more efficiently than chlorine, paired with catalytic carbon filtration for the best results.

If your water heater is the issue that is causing your well water to smell, replacing the anode rod with a zinc-aluminum rod can reduce the hydrogen sulfide production, as these rods are less likely to react with sulfites. It’s also important to inspect your anode rod every 2 to 3 years to prevent corrosion.

hydrogen sulfide well water-filtration system

Battling the Rust-Colored Menace: Iron Bacteria in Your Well

If you’ve stumbled upon a mysterious rust-colored slime lurking in your plumbing, you’ve likely encountered iron bacteria—the microscopic culprits responsible for that metallic taste and musty-smelling well water. While generally harmless to our health, these persistent microorganisms feed on iron and create a sticky biofilm that can clog pipes and reduce water flow over time.

Picture them as tiny miners, tirelessly extracting iron to fuel their colony’s growth. Getting rid of these relentless miners starts with physically scrubbing away their “mine shafts” (the slimy biofilm) from the well casing and pipes. A brush or wire tool helps dislodge the majority of the colony, loosening deposits and flushing them out before they can multiply further.

After the elbow grease, a potent chemical attack ensures any stragglers meet their match. Shock chlorination—essentially dousing your well and plumbing system with a powerful chlorine solution—penetrates the film the bacteria create, neutralizing them at the source. Some experts bolster this approach with surfactants, which break down surface tension and help the chlorine get through the stubborn slime.

The secret to successful eradication lies in giving the chlorine solution enough contact time (often 12–24 hours) to do its job—then thoroughly flushing and retesting your water. With a little diligence—regular inspections, preventive treatments, and the occasional shock chlorination—you can keep those pesky iron bacteria from turning your well into their own private mining operation.

It’s generally advisable to hire a local water well professional for shock chlorination. They have the expertise and equipment to properly calculate dosages, ensure thorough disinfection, and address any unexpected issues, which helps protect both your well and your health.

Well Water Filtration to Banish Water That Smells Like Rotten Eggs

When it comes to treating hydrogen sulfide (H₂S) in well water, a combination of KDF and catalytic carbon may provide a very effective sulfur water filtration system for eliminating the “rotten egg” smell and other related contaminants.

KDF is a type of filter media made of copper-zinc granules that uses a redox (electron exchange) reaction to oxidize and remove contaminants like hydrogen sulfide and iron from the water. This process helps to reduce odors, especially sulfur-related smells, while also addressing other impurities in the water.

From municipal or well water sources, KDF 85 removes or lowers iron and hydrogen sulfide and also helps to manage scale, algae, and bacteria.

Catalytic carbon is a specialized form of activated carbon that has enhanced surface properties, making it highly effective at absorbing and chemically reacting with a range of contaminants, including organic compounds and residual traces of hydrogen sulfide. When used alongside KDF, catalytic carbon further boosts the removal process, ensuring a cleaner and more purified water supply.

Together, KDF 85 and catalytic carbon create a powerful water treatment that targets both iron and hydrogen sulfide gas, providing an efficient way to improve water quality. This combination is particularly effective for addressing hydrogen sulfide issues, offering homeowners a reliable solution to restore fresh, clean water from well water that smells like rotten eggs.

Well Water Testing to Prevent Smelly Well Water in the Future

To prevent smelly well water from becoming a recurring issue, regular maintenance is key. Start a regular annual well water testing program for coliform bacteria, nitrates, sulfates, and other contaminants. This will allow you to identify your smelly water problems early on, before they worsen.

Wellhead protection is also essential. Make sure to seal any cracks in the well casing to prevent surface runoff from contaminating your water. And keep a 50-foot buffer zone around the well, free from fertilizers, pesticides, and organic debris.

Water heater maintenance needs a lot more attention in most homes. Flushing the hot water tank annually can help remove sediment buildup that could promote bacterial growth. You might also want to install a thermostatic mixing valve to lower water heater temperatures, which will slow down anode rod corrosion. Water heater tank maintenance can double the life of a $1000.00 tank.

Hydrogen Sulfide Toxicity on Humans

There is a lack of data regarding the oral toxicity of hydrogen sulfide specifically. However, compounds such as alkali sulfides are known to irritate mucous membranes and can cause symptoms like nausea, vomiting, and epigastric pain when ingested. For example, an oral dose of sodium sulfide estimated at 10–15 g has been considered fatal for humans.

When inhaled, hydrogen sulfide is extremely acutely toxic. Its rapid toxic effect is largely due to its ability to form a complex with the iron(III) ion in the mitochondrial enzyme cytochrome oxidase, which results in the inhibition of oxidative metabolism. Additionally, sulfides have been shown to inhibit several other enzymes, including succinate dehydrogenase, adenosinetriphosphatase, DOPA oxidase, carbonic anhydrase, dipeptidase, and benzamidase, as well as iron-containing enzymes like catalase and peroxidases. There is also evidence suggesting that the reduction of disulfide bridges in proteins may alter enzyme function.

At concentrations of 15–30 mg/m³, hydrogen sulfide can irritate the eyes and respiratory tract, while exposure to levels between 700–1400 mg/m³ may lead to unconsciousness and respiratory paralysis, which can be fatal.

Research on the effects of prolonged exposure to low concentrations of hydrogen sulfide toxicity is limited. One study analyzed the reticulocytes of 17 workers in the wood-pulp industry who were exposed to low levels of hydrogen sulfide and methyl thiols. This study observed that the activities of several enzymes involved in the heme biosynthetic pathway were inhibited, although the exact mechanism behind this inhibition remains unclear.

Conclusion

Smelly well water doesn’t have to be a long-term problem. By carefully diagnosing the cause—whether it’s hydrogen sulfide gas, iron bacteria, or something related to your water heater. Should the water indeed contain hydrogen sulfide (H₂S), there are solutions such as a well water filtration system to deal with the odor and provide fresh, clean water.

Regular well water testing is vital for all water wells; wellhead protection and water heater maintenance can go a long way in preventing future issues. And if you’re dealing with a more complex problem, consulting a professional is always a good idea to ensure the best solution for your home’s water system. Well water test kits for hydrogen sulfide (H₂S) are available online.

By staying on top of your well water maintenance schedule and addressing water well problems early, you’ll ensure your water source remains clean, safe, and free of water odors for years to come.

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